The first installment of our effort to understand the genomic diversity and biogeogrpahy of the D. melanogaster Wolbachia endosymbiont has just been published in PLOS Genetics along with three other companion papers describing aspects of genetic diversity in African populations of D. melanogaster. The Wolbachia genome sequences and alignments from our paper can be found here.
Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster.
Richardson MF, Weinert LA, Welch JJ, Linheiro RS, Magwire MM, Jiggins FM, Bergman CM.
PLoS Genet. 2012 Dec;8(12):e1003129. doi: 10.1371/journal.pgen.1003129. Epub 2012 Dec 20.